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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104525372_104527417_F

Intron Information:

Intron Rank:
138761
Intron Class:
major
Intron Phase:
Intron Coordinates:
104525372 - 104527417
Intron Length:
2046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TGAATCACTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCTTTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
70.7
41.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
66.8
0.38
1
56.1
44.2
Minor 5ss
41.6
-0.9
3.1
53.4
44.8
Minor BPS
62.4
0.37
1.3
72.08
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024753
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029583
104516318 - 104527621
11304