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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104558461_104574496_R

Intron Information:

Intron Rank:
148561
Intron Class:
major
Intron Phase:
Intron Coordinates:
104558461 - 104574496
Intron Length:
16036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGAAGA
5'SS Class:
major
3'SS Sequence:
ATCTTTATTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTATCTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
65.4
40.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
70.8
0.47
1.1
68.8
40.5
Minor 5ss
33.2
-1.9
3.2
39.8
40.2
Minor BPS
60.3
0.3
1.6
66.51
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027346
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026843
104558172 - 104576393
18222