About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104575751_104576310_R

Intron Information:

Intron Rank:
148560
Intron Class:
major
Intron Phase:
Intron Coordinates:
104575751 - 104576310
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTGTGCC
5'SS Class:
major
3'SS Sequence:
CATTTTTGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTATCCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.7
34.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.3
0.61
0.9
76.5
37.2
Minor 5ss
34.7
-1.7
3.1
40.9
40.8
Minor BPS
64.1
0.52
1.7
79.31
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027346
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026843
104558172 - 104576393
18222
ENSAPLT00000020853
104572522 - 104576532
4011