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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104657105_104660242_F

Intron Information:

Intron Rank:
128761
Intron Class:
major
Intron Phase:
Intron Coordinates:
104657105 - 104660242
Intron Length:
3138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGCC
5'SS Class:
major
3'SS Sequence:
ATCTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
ATGTTTAGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
69.1
37.5
Major BPS
70
0.5
1
67
39.8
Major PPT
87.1
0.83
0.7
84.9
29.2
Minor 5ss
30.6
-2.2
3.5
42.3
44.6
Minor BPS
44.9
-0.3
1.9
63.36
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019293
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041028
104656680 - 104661026
4347