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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104660317_104660613_F

Intron Information:

Intron Rank:
128755
Intron Class:
major
Intron Phase:
Intron Coordinates:
104660317 - 104660613
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
GATTCTGTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
83.7
34.8
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
77.5
0.62
0.9
73.7
40.5
Minor 5ss
45.4
-0.5
2.9
66.6
44.4
Minor BPS
52.3
0.15
2
72.09
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019293
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041028
104656680 - 104661026
4347
ENSAPLT00000034815
104656680 - 104661026
4347
ENSAPLT00000029753
104646664 - 104664026
17363