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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104660317_104662885_F

Intron Information:

Intron Rank:
128764
Intron Class:
major
Intron Phase:
Intron Coordinates:
104660317 - 104662885
Intron Length:
2569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTGTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
83.7
34.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.9
0.63
0.9
69.8
40.6
Minor 5ss
45.4
-0.5
2.9
66.6
44.4
Minor BPS
50.5
-0
2.3
69.18
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019293
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046631
104646664 - 104664026
17363