Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104680719_104686190_F

Intron Information:

Intron Rank:

146640

Intron Class:

major

Intron Phase:

Intron Coordinates:

104680719 - 104686190

Intron Length:

5472

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGACCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCTATCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAA

U12 Branch Point Sequence:

TAATGCATAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.8

74.2

36.1

Major BPS

78.6

0.71

78.6

Major PPT

85.1

0.79

0.8

85.7

27.3

Minor 5ss

29.2

-2.4

3.1

45.5

Minor BPS

48.5

-0.1

2.1

64.23

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029015

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037345

104679999 - 104689285

9287