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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104686271_104688488_F

Intron Information:

Intron Rank:
146641
Intron Class:
major
Intron Phase:
Intron Coordinates:
104686271 - 104688488
Intron Length:
2218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAAAT
5'SS Class:
major
3'SS Sequence:
TCCTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTACTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74
36.4
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
87.9
0.85
0.7
83.4
24.8
Minor 5ss
33.1
-1.9
3.4
48
47.7
Minor BPS
69
0.68
1.8
89.22
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037345
104679999 - 104689285
9287