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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104782534_104788522_F

Intron Information:

Intron Rank:
136665
Intron Class:
major
Intron Phase:
Intron Coordinates:
104782534 - 104788522
Intron Length:
5989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTCCC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AACTAATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
63.9
38.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
36.5
-1.5
3.2
49.7
39.7
Minor BPS
49.6
0.05
1.9
67.69
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023590
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020275
104776009 - 104788644
12636