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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104909587_104910582_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
104909587 - 104910582
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTCTGAAG
5'SS Class:
weak_major
3'SS Sequence:
TGCTCATTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TCTTGCTCATTT
Flanking Amino Acid:
QPGWTSWGNEL*
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.3
54.7
43.7
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
79.5
0.66
0.9
73.2
36.1
Minor 5ss
27
-2.6
3
31.5
42.3
Minor BPS
48.3
-0
2.2
71.65
45.8

Associated Gene:

Gene:
METTL4
Ensembl Gene ID:
ENSAPLG00000015046
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015678
104909369 - 104927191
17823