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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104910675_104917037_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104910675 - 104917037
Intron Length:
6363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATCCTCAACT
Flanking Amino Acid:
SLHSHKPPLTAVLAEFVKPD
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.2
0.59
0.9
72.1
37.7
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
80.7
1.04
1.4
93.76
33.6

Associated Gene:

Gene:
METTL4
Ensembl Gene ID:
ENSAPLG00000015046
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015678
104909369 - 104927191
17823
ENSAPLT00000042713
104909369 - 104927191
17823
ENSAPLT00000037847
104910443 - 104928325
17883
ENSAPLT00000034507
104909369 - 104927191
17823