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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104917127_104917701_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104917127 - 104917701
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCAG
5'SS Class:
major
3'SS Sequence:
GTTTATACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTATACAACA
Flanking Amino Acid:
RVQGSVKEAQRKSEDILPIP
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
61.5
44.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
69.4
0.44
1
63.8
41.4
Minor 5ss
43.3
-0.7
2.9
55.3
48.9
Minor BPS
48.4
-0.1
2
66.78
39

Associated Gene:

Gene:
METTL4
Ensembl Gene ID:
ENSAPLG00000015046
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042713
104909369 - 104927191
17823
ENSAPLT00000037847
104910443 - 104928325
17883
ENSAPLT00000034507
104909369 - 104927191
17823
ENSAPLT00000015678
104909369 - 104927191
17823