About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104917809_104918023_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104917809 - 104918023
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
GCATCTTTAACT
Flanking Amino Acid:
KTLAEWHWVKITRSGEFVLP
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
75.4
0.57
1
75.9
38
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
76.7
0.92
1.2
81.48
40.1

Associated Gene:

Gene:
METTL4
Ensembl Gene ID:
ENSAPLG00000015046
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034507
104909369 - 104927191
17823
ENSAPLT00000015678
104909369 - 104927191
17823
ENSAPLT00000042713
104909369 - 104927191
17823
ENSAPLT00000037847
104910443 - 104928325
17883