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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104924174_104925685_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104924174 - 104925685
Intron Length:
1512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TACGACCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TTTTTCTCTACG
Flanking Amino Acid:
ELDALEYHTKIRKLIWEGTL
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
63.1
0.29
1
54.6
40
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
58.6
0.12
2
71.51
41.3

Associated Gene:

Gene:
METTL4
Ensembl Gene ID:
ENSAPLG00000015046
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034507
104909369 - 104927191
17823
ENSAPLT00000015678
104909369 - 104927191
17823
ENSAPLT00000042713
104909369 - 104927191
17823
ENSAPLT00000037847
104910443 - 104928325
17883