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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104930554_104930686_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104930554 - 104930686
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTTACTTTACAT
Flanking Amino Acid:
IQQCIKQLCEFLVDNGYAHN
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
91.7
0.94
0.6
91.6
19.7
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
55.9
0.26
1.8
74.76
41.7

Associated Gene:

Gene:
NDC80
Ensembl Gene ID:
ENSAPLG00000014505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024847
104927212 - 104942291
15080
ENSAPLT00000015170
104928411 - 104942291
13881