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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104934899_104935765_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104934899 - 104935765
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CATCCCACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TAATTTATAACC
Flanking Amino Acid:
ELDAEVQSKLKDLFNIDEFQ
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
70.7
0.47
0.9
63
32.5
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
60.1
0.3
1.6
69.06
35.9

Associated Gene:

Gene:
NDC80
Ensembl Gene ID:
ENSAPLG00000014505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024847
104927212 - 104942291
15080
ENSAPLT00000015170
104928411 - 104942291
13881