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Intron Name: Anas_platyrhynchos_platyrhynchos_2_104936795_104937077_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

104936795 - 104937077

Intron Length:

283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TTTATGAACTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

GGTTTATGAACT

Flanking Amino Acid:

KGVNEEVEAAEMEVEAMKQE

Intron Amino Acid Position:

342

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.5

1.07

0.7

84.1

30.2

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

65.6

0.35

63.8

41.8

Minor 5ss

39.6

-1.2

2.8

49.9

46.3

Minor BPS

57.4

0.31

1.7

75.87

39.9

Associated Gene:

Gene:

NDC80

Ensembl Gene ID:

ENSAPLG00000014505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024847

104927212 - 104942291

15080

ENSAPLT00000015170

104928411 - 104942291

13881