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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104937284_104938301_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104937284 - 104938301
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTGAA
5'SS Class:
major
3'SS Sequence:
CACTTCTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTCTATGATT
Flanking Amino Acid:
ELKYARSKEAVETQLAEYHK
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
70.6
35.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
65.7
0.35
1
61.4
38.6
Minor 5ss
38.6
-1.3
3.1
48.8
47.3
Minor BPS
62.5
0.47
1.6
79.45
37.2

Associated Gene:

Gene:
NDC80
Ensembl Gene ID:
ENSAPLG00000014505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024847
104927212 - 104942291
15080
ENSAPLT00000015170
104928411 - 104942291
13881