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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104938812_104939399_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104938812 - 104939399
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCTTAGTT
Flanking Amino Acid:
KMSLEDALVQMNAMVVEKKS
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
85.9
29.8
Major BPS
100
1.24
0.5
100
0
Major PPT
79.5
0.66
0.8
71.7
38.7
Minor 5ss
47.1
-0.3
2.7
68.3
42.6
Minor BPS
71.7
0.76
1.5
85.91
34.3

Associated Gene:

Gene:
NDC80
Ensembl Gene ID:
ENSAPLG00000014505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024847
104927212 - 104942291
15080
ENSAPLT00000015170
104928411 - 104942291
13881