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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104941815_104942168_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104941815 - 104942168
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
GTAACTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTTCTGTAACT
Flanking Amino Acid:
VIATHVVSIEKYLDEQNAKI
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
71.1
0.47
0.9
62.3
44
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
67.9
0.64
2
87.23
39

Associated Gene:

Gene:
NDC80
Ensembl Gene ID:
ENSAPLG00000014505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024847
104927212 - 104942291
15080
ENSAPLT00000015170
104928411 - 104942291
13881