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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104976228_104976322_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104976228 - 104976322
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGCTCCTTAATT
Flanking Amino Acid:
AGIRSIQIKLLFDDSNGKPA
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.4
36.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.4
0.46
1
66.2
34.5
Minor 5ss
37.4
-1.4
3
44.2
44.6
Minor BPS
83.2
1.12
1.1
88.65
36.5

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035642
104971149 - 105035789
64641
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000022243
104970604 - 105035739
65136
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591