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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104980058_104982058_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
104980058 - 104982058
Intron Length:
2001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
AAAAATATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAAAA
Flanking Amino Acid:
NYFHLWTRQLAHIYHYYIHG
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.4
60.6
46.7
Major BPS
100
1.24
0.5
100
0
Major PPT
61.3
0.25
1.1
51.6
45.6
Minor 5ss
40.5
-1.1
2.8
44.8
43.4
Minor BPS
63.2
0.41
1.6
75.42
35.1

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591
ENSAPLT00000035642
104971149 - 105035789
64641
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000022243
104970604 - 105035739
65136