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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104982153_104982367_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104982153 - 104982367
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAG
U12 Branch Point Sequence:
TTTGGTCTAAGG
Flanking Amino Acid:
ISPFNNIDIEISLFEKGKVP
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
52.8
0.07
1.7
63.6
42.5
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
42.7
-0.6
2.3
55.09
46.5

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591
ENSAPLT00000035642
104971149 - 105035789
64641
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000022243
104970604 - 105035739
65136