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Intron Name: Anas_platyrhynchos_platyrhynchos_2_104982579_104983344_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

104982579 - 104983344

Intron Length:

766

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTAATCAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTCTTTTTAATC

Flanking Amino Acid:

TYPDDPCYPSKLNDDDEDYD

Intron Amino Acid Position:

338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

76.5

26.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

70.1

0.45

1.1

69.2

40.1

Minor 5ss

28.3

-2.5

3.1

31.2

36.7

Minor BPS

74.9

0.76

1.1

33.7

Associated Gene:

Gene:

SMCHD1

Ensembl Gene ID:

ENSAPLG00000013237

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035642

104971149 - 105035789

64641

ENSAPLT00000030989

104970604 - 105035365

64762

ENSAPLT00000022243

104970604 - 105035739

65136

ENSAPLT00000013890

104970604 - 105035739

65136

ENSAPLT00000048156

104971149 - 105035739

64591