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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104983755_104984211_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104983755 - 104984211
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTATT
5'SS Class:
strong_major
3'SS Sequence:
TATCTCCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
ATTTTGTTATCT
Flanking Amino Acid:
TLFTRIFNGQEQRMKIDREF
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
88.8
24.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.3
0.66
0.8
73.5
31.2
Minor 5ss
36.3
-1.6
2.9
51.2
45.3
Minor BPS
56.2
0.27
2.3
81.65
40.2

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591
ENSAPLT00000035642
104971149 - 105035789
64641
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000022243
104970604 - 105035739
65136