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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104984410_104984552_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104984410 - 104984552
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCAACTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTCTTCAACT
Flanking Amino Acid:
DGKTYKTGQLVKTTKTLPIF
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.7
34.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69
0.43
1
62.7
37.2
Minor 5ss
39.7
-1.2
2.8
46.1
43.6
Minor BPS
74.5
0.85
1.5
88.1
37.3

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035642
104971149 - 105035789
64641
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000022243
104970604 - 105035739
65136
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591