Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104984667_104985126_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

104984667 - 104985126

Intron Length:

460

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGACAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

CTGTTTTTAACT

Flanking Amino Acid:

ATGGEVQIALEPKALYAETK

Intron Amino Acid Position:

544

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

69.6

36.5

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

31.4

-2.1

3.1

36.2

41.7

Minor BPS

75.2

0.87

1.2

82.67

39.4

Associated Gene:

Gene:

SMCHD1

Ensembl Gene ID:

ENSAPLG00000013237

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035642

104971149 - 105035789

64641

ENSAPLT00000030989

104970604 - 105035365

64762

ENSAPLT00000022243

104970604 - 105035739

65136

ENSAPLT00000013890

104970604 - 105035739

65136

ENSAPLT00000048156

104971149 - 105035739

64591