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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104985892_104987603_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
104985892 - 104987603
Intron Length:
1712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTATATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AAATCCTAAATA
Flanking Amino Acid:
LLVELKVILHSPTGNKEIIS
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.8
86
32.8
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
62.6
0.39
1.6
67.98
38.3

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048156
104971149 - 105035739
64591
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000035642
104971149 - 105035789
64641
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000022243
104970604 - 105035739
65136