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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_104993819_104995496_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
104993819 - 104995496
Intron Length:
1678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGC
5'SS Class:
major
3'SS Sequence:
ACATTTTAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TACATTTTAAAC
Flanking Amino Acid:
AQPKLIVHCKFLGAANLPVY
Intron Amino Acid Position:
863

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66.5
40.4
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
66.8
0.38
1
62.8
41.6
Minor 5ss
43.5
-0.7
3
59.3
45.5
Minor BPS
55.7
0.16
1.4
60.9
38.2

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591
ENSAPLT00000035642
104971149 - 105035789
64641
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000022243
104970604 - 105035739
65136