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Intron Name: Anas_platyrhynchos_platyrhynchos_2_104996705_104997383_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

104996705 - 104997383

Intron Length:

679

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

ATTTTAATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TAAATTTTAATT

Flanking Amino Acid:

ITSSMAEKIKVNWTPRINKE

Intron Amino Acid Position:

984

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.15

0.6

96.2

11.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

78.5

0.64

0.9

37.5

Minor 5ss

39.3

-1.2

2.8

50.9

45.5

Minor BPS

65.3

0.56

1.2

74.23

36.6

Associated Gene:

Gene:

SMCHD1

Ensembl Gene ID:

ENSAPLG00000013237

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030989

104970604 - 105035365

64762

ENSAPLT00000022243

104970604 - 105035739

65136

ENSAPLT00000013890

104970604 - 105035739

65136

ENSAPLT00000048156

104971149 - 105035739

64591

ENSAPLT00000035642

104971149 - 105035789

64641