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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105002034_105002752_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105002034 - 105002752
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTCTCAATA
Flanking Amino Acid:
DKSNLQITWQESTLTMRVKG
Intron Amino Acid Position:
1103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
81.6
31.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.4
0.55
0.9
71.1
34.3
Minor 5ss
45.5
-0.5
2.5
60.1
44.4
Minor BPS
69
0.59
1.4
76.54
34.4

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035642
104971149 - 105035789
64641
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000022243
104970604 - 105035739
65136
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591