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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105004265_105007800_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105004265 - 105007800
Intron Length:
3536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAA
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
ISLSKSSNLKIFSSNQQHKT
Intron Amino Acid Position:
1201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
84.3
29.6
Major BPS
56.5
0.16
0.9
63.3
29.1
Major PPT
89
0.88
0.8
87.5
30
Minor 5ss
42.7
-0.8
3
58.2
46.4
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000022243
104970604 - 105035739
65136
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591