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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105007881_105010583_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105007881 - 105010583
Intron Length:
2703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTATAATG
Flanking Amino Acid:
NLGVISIHAPRGEHILQVKA
Intron Amino Acid Position:
1227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.3
0.59
1
72.8
41.9
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
58.1
0.12
1.6
64.77
37.5

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000022243
104970604 - 105035739
65136
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591
ENSAPLT00000035642
104971149 - 105035789
64641