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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105010742_105014225_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105010742 - 105014225
Intron Length:
3484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
ASFPAGGTFPDFMVSVLSED
Intron Amino Acid Position:
1280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.3
0.82
0.7
81.2
30.4
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000022243
104970604 - 105035739
65136
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591
ENSAPLT00000035642
104971149 - 105035789
64641