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Intron Name: Anas_platyrhynchos_platyrhynchos_2_105014845_105017398_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

105014845 - 105017398

Intron Length:

2554

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGCAG

5'SS Class:

major

3'SS Sequence:

TTGATTACTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTGGTTTTAATT

Flanking Amino Acid:

DDKEEGFSYFRDKVIPERVG

Intron Amino Acid Position:

1339

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.2

0.43

1.1

44.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

73.6

0.53

0.9

71.5

39.3

Minor 5ss

28.4

-2.5

3.5

37.7

47.1

Minor BPS

67.5

0.63

1.3

78.42

39.1

Associated Gene:

Gene:

SMCHD1

Ensembl Gene ID:

ENSAPLG00000013237

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035642

104971149 - 105035789

64641

ENSAPLT00000030989

104970604 - 105035365

64762

ENSAPLT00000022243

104970604 - 105035739

65136

ENSAPLT00000013890

104970604 - 105035739

65136

ENSAPLT00000048156

104971149 - 105035739

64591