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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105018022_105021560_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105018022 - 105021560
Intron Length:
3539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTATA
5'SS Class:
major
3'SS Sequence:
GTTTCACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTCTCCAAACT
Flanking Amino Acid:
LVKDLHLHVMDEYNNRTGFD
Intron Amino Acid Position:
1413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
79.8
35.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.9
0.7
0.9
73.6
36
Minor 5ss
45
-0.5
2.6
56.8
42.7
Minor BPS
51.2
0.12
2
76.34
39.9

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035642
104971149 - 105035789
64641
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000022243
104970604 - 105035739
65136
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591