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Intron Name: Anas_platyrhynchos_platyrhynchos_2_105021711_105025321_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

105021711 - 105025321

Intron Length:

3611

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGTGTG

5'SS Class:

major

3'SS Sequence:

CTTTTTTAATTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TCTTTTTTAATT

Flanking Amino Acid:

FPFDRGSAEINLVLAENSPG

Intron Amino Acid Position:

1463

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

70.9

39.3

Major BPS

87.3

0.93

0.8

36.5

Major PPT

76.8

0.6

0.9

78.8

33.4

Minor 5ss

38.9

-1.3

3.4

55.1

43.4

Minor BPS

78.6

0.98

86.64

33.8

Associated Gene:

Gene:

SMCHD1

Ensembl Gene ID:

ENSAPLG00000013237

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035642

104971149 - 105035789

64641

ENSAPLT00000030989

104970604 - 105035365

64762

ENSAPLT00000022243

104970604 - 105035739

65136

ENSAPLT00000013890

104970604 - 105035739

65136

ENSAPLT00000048156

104971149 - 105035739

64591