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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105025449_105026708_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105025449 - 105026708
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTATTGGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATCCTTATTC
Flanking Amino Acid:
PYRLSFMFYNGQVKEAETRE
Intron Amino Acid Position:
1505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.7
32.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.9
0.67
1
77.1
41.8
Minor 5ss
53.6
0.12
2.3
66.5
39.1
Minor BPS
68.1
0.55
1.5
73.78
37

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048156
104971149 - 105035739
64591