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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105026795_105027818_F

Intron Information:

Intron Rank:
39
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
105026795 - 105027818
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGGCTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCAATTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTAACTTCAAAT
Flanking Amino Acid:
QQIELPQTNTLQYVDSLIKQ
Intron Amino Acid Position:
1574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.1
54.5
42.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.2
0.68
0.8
77.5
35.4
Minor 5ss
43.6
-0.7
3.3
64.6
41
Minor BPS
50.3
0.09
1.7
67.28
43.1

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035642
104971149 - 105035789
64641
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591