About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105028401_105029208_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105028401 - 105029208
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGAAA
5'SS Class:
major
3'SS Sequence:
ACTCTTTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CACTCTTTAACT
Flanking Amino Acid:
IYKKTLPDWNRPLPHLRNGK
Intron Amino Acid Position:
1678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
68.2
38.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.3
0.34
1
59.8
40.2
Minor 5ss
29.5
-2.3
3.4
38.5
46.8
Minor BPS
75.8
0.89
1.2
80.6
41.6

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035642
104971149 - 105035789
64641
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591