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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105030710_105031990_F

Intron Information:

Intron Rank:
43
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
105030710 - 105031990
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
CGTACCTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTTTTCGTACCT
Flanking Amino Acid:
LDAANHYRKEVVKITHCPTL
Intron Amino Acid Position:
1739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
64
0.32
1
58
38.3
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
52.7
0.16
2.3
78.66
44.1

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030989
104970604 - 105035365
64762
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591
ENSAPLT00000035642
104971149 - 105035789
64641