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Intron Name: Anas_platyrhynchos_platyrhynchos_2_105032163_105033886_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

105032163 - 105033886

Intron Length:

1724

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGGGTTAA

5'SS Class:

strong_major

3'SS Sequence:

ATTATTCCATTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATTATTC

Flanking Amino Acid:

KLYSTFSGQIDLLQQYRAAV

Intron Amino Acid Position:

1796

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

76.3

30.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

69.5

0.44

0.9

68.6

37.8

Minor 5ss

32.7

-2

3.1

39.4

46.5

Minor BPS

59.3

0.27

1.8

74.91

35.9

Associated Gene:

Gene:

SMCHD1

Ensembl Gene ID:

ENSAPLG00000013237

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035642

104971149 - 105035789

64641

ENSAPLT00000030989

104970604 - 105035365

64762

ENSAPLT00000022243

104970604 - 105035739

65136

ENSAPLT00000013890

104970604 - 105035739

65136

ENSAPLT00000048156

104971149 - 105035739

64591