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Intron Name: Anas_platyrhynchos_platyrhynchos_2_105034046_105034771_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

105034046 - 105034771

Intron Length:

726

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTATGTTAA

5'SS Class:

major

3'SS Sequence:

TTTTTTTTAATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

KNLMLIEQKLGMTPSDKVTE

Intron Amino Acid Position:

1849

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

72.9

34.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.6

0.82

0.7

85.3

27.9

Minor 5ss

45.2

-0.5

2.5

48.8

47.3

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

SMCHD1

Ensembl Gene ID:

ENSAPLG00000013237

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035642

104971149 - 105035789

64641

ENSAPLT00000030989

104970604 - 105035365

64762

ENSAPLT00000022243

104970604 - 105035739

65136

ENSAPLT00000013890

104970604 - 105035739

65136

ENSAPLT00000048156

104971149 - 105035739

64591