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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105034890_105035636_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105034890 - 105035636
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
MRRETVKKLYSSEEWISSPT
Intron Amino Acid Position:
1888

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
SMCHD1
Ensembl Gene ID:
ENSAPLG00000013237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035642
104971149 - 105035789
64641
ENSAPLT00000022243
104970604 - 105035739
65136
ENSAPLT00000013890
104970604 - 105035739
65136
ENSAPLT00000048156
104971149 - 105035739
64591