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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105059690_105060549_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105059690 - 105060549
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCAG
5'SS Class:
major
3'SS Sequence:
CCTTCCCCGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
CCTTCCTTCCCC
Flanking Amino Acid:
GTQHGLPGTGRNWCAYIVNR
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
59.7
46.7
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
65.1
0.34
0.9
58.6
33.1
Minor 5ss
42.8
-0.8
3
55.8
48.4
Minor BPS
43.3
-0.5
3.7
65.55
46.5

Associated Gene:

Gene:
EMILIN2
Ensembl Gene ID:
ENSAPLG00000013210
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037350
105059245 - 105094865
35621