About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105101_105313_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
105101 - 105313
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATGTGGTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATGTCATAATT
Flanking Amino Acid:
NVSFKYSKDGPWIYNNLEFG
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.2
30.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
73.2
0.52
1
65.7
44.8
Minor 5ss
33.4
-1.9
2.8
34
41.5
Minor BPS
59.7
0.38
1.7
77.53
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009201
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009615
100810 - 108472
7663