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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105106663_105107674_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105106663 - 105107674
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGATTTAGAATT
Flanking Amino Acid:
SPSSLFSAFHREVIEKKPEK
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
90
0.9
0.6
89.4
19.2
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
48.6
-0
1.6
67.07
37.6

Associated Gene:

Gene:
LPIN2
Ensembl Gene ID:
ENSAPLG00000012547
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040091
105104185 - 105138313
34129
ENSAPLT00000022459
105104185 - 105147684
43500