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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105111230_105112353_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
105111230 - 105112353
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GATGTCATGGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTTACATTTATT
Flanking Amino Acid:
PATIKEQVNSRPPEDDSSSD
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
73.6
31.1
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
57.2
0.16
1.1
52
42.3
Minor 5ss
42.1
-0.9
2.6
53.2
44.1
Minor BPS
51.7
0.13
2
73.97
42.7

Associated Gene:

Gene:
LPIN2
Ensembl Gene ID:
ENSAPLG00000012547
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040091
105104185 - 105138313
34129
ENSAPLT00000022459
105104185 - 105147684
43500
ENSAPLT00000013150
105105089 - 105138313
33225