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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105113426_105113781_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105113426 - 105113781
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTAAACA
Flanking Amino Acid:
NPNLVIRIYNRYYNWALAAP
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.9
0.61
1
74.1
39.5
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
65.1
0.47
1.6
75.16
36.6

Associated Gene:

Gene:
LPIN2
Ensembl Gene ID:
ENSAPLG00000012547
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040091
105104185 - 105138313
34129
ENSAPLT00000022459
105104185 - 105147684
43500
ENSAPLT00000013150
105105089 - 105138313
33225