About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_105123784_105127530_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
105123784 - 105127530
Intron Length:
3747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GACTTATTAAAT
Flanking Amino Acid:
SDDEKSVQPLRGSSNSSPKG
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.3
33.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
82.9
0.74
0.9
76.7
37.4
Minor 5ss
44.9
-0.6
3
64.1
47.4
Minor BPS
53.7
0.2
1.7
68.31
41.8

Associated Gene:

Gene:
LPIN2
Ensembl Gene ID:
ENSAPLG00000012547
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013150
105105089 - 105138313
33225
ENSAPLT00000040091
105104185 - 105138313
34129
ENSAPLT00000022459
105104185 - 105147684
43500